PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678455045
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family NF-YB
Protein Properties Length: 178aa    MW: 19204.4 Da    PI: 6.5329
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678455045genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB187.41e-5827123197
      NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                vreqdrflPian+srimkk+lPan+ki+kdaketvqecvsefisf+tseasdkcqrekrktingddllwa+atlGfedy++plkvyl++yre+eg++
  678455045  27 VREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLSRYREIEGDS 123
                69*********************************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.9E-5622150IPR009072Histone-fold
SuperFamilySSF471135.39E-4230152IPR009072Histone-fold
PfamPF008082.1E-283397IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006159.2E-216179No hitNo description
PROSITE patternPS0068506480IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006159.2E-218098No hitNo description
PRINTSPR006159.2E-2199117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MADSHGAPGS PAGGGNESGG DQSPRGVREQ DRFLPIANIS RIMKKALPAN GKIAKDAKET  60
VQECVSEFIS FITSEASDKC QREKRKTING DDLLWAMATL GFEDYIDPLK VYLSRYREIE  120
GDSKGSAKGT DGSARKEGGQ TGQSSQLVQQ GSFSQGMNYP NTQNRSSHMM VPIIPGMD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B2e-4827118192Transcription factor HapC (Eurofung)
4g92_B2e-4827118192Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094723.11e-105PREDICTED: nuclear transcription factor Y subunit B-8-like
RefseqXP_011094722.11e-105PREDICTED: nuclear transcription factor Y subunit B-8-like
SwissprotQ8VYK44e-84NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A0V0HS791e-95A0A0V0HS79_SOLCH; Putative nuclear transcription factor Y subunit B-10-like
STRINGGLYMA03G33490.12e-88(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53340.11e-81nuclear factor Y, subunit B10